Purification of Enterovirus A71, strain 4643, WT capsid
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 8e2y
Q-score: 0.148
Catching A, Te Yeh M, Bianco S, Capponi S, Andino R
Nat Commun (2023) 14 pp. 7450-7450 [ Pubmed: 37978288 DOI: doi:10.1038/s41467-023-43029-0 ]
- Vp2 (25 kDa, Protein from Enterovirus A71)
- Vp1 (25 kDa, Protein from Enterovirus A71)
- Genome polyprotein (25 kDa, Protein from Enterovirus A71)
- Human enterovirus 71 (Virus from Human enterovirus 71)
Purification of Enterovirus A71, strain 4643, WT capsid
Resolution: 14.0 Å
EM Method: Single-particle
Fitted PDBs: 8e31
Q-score: 0.084
Catching A, Te Yeh M, Bianco S, Capponi S, Andino R
Nat Commun (2023) 14 pp. 7450-7450 [ Pubmed: 37978288 DOI: doi:10.1038/s41467-023-43029-0 ]
- Vp1 (25 kDa, Protein from Enterovirus A71)
- Vp3 (23 kDa, Protein from Enterovirus A71)
- Genome polyprotein (24 kDa, Protein from Enterovirus A71)
- Human enterovirus 71 (Virus from Human enterovirus 71)
Cryo-EM structure of the NS5-SLA complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8gzp
Q-score: 0.486
Osawa T, Aoki M, Ehara H, Sekine SI
Mol Cell (2023) 83 pp. 2781- [ Pubmed: 37478848 DOI: doi:10.1016/j.molcel.2023.06.023 ]
- Rna (54 kDa, RNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Rna replicase complex bound to the mini-genome rna (Complex from Dengue virus)
- Magnesium ion (24 Da, Ligand)
- Mini-genome rna (Complex from synthetic construct)
- Ns5 (Complex from Dengue virus)
- Genome polyprotein (104 kDa, Protein from Dengue virus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
Cryo-EM structure of the NS5-NS3-SLA complex
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8gzq
Q-score: 0.429
Osawa T, Aoki M, Ehara H, Sekine SI
Mol Cell (2023) 83 pp. 2781- [ Pubmed: 37478848 DOI: doi:10.1016/j.molcel.2023.06.023 ]
- Ns3 (Complex from Dengue virus)
- Genome polyprotein (74 kDa, Protein from Dengue virus)
- Rna (54 kDa, RNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Rna replicase complex bound to the mini-genome rna (Complex from Dengue virus)
- Mini-genome rna (Complex from synthetic construct)
- Ns5 (Complex from Dengue virus)
- Genome polyprotein (104 kDa, Protein from Dengue virus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
Cryo-EM structure of the the NS5-NS3 RNA-elongation complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gzr
Q-score: 0.638
Osawa T, Aoki M, Ehara H, Sekine SI
Mol Cell (2023) 83 pp. 2781- [ Pubmed: 37478848 DOI: doi:10.1016/j.molcel.2023.06.023 ]
- Ns3 (Complex from Dengue virus)
- Ns5-ns3 rna-elongation complex (Complex from Dengue virus)
- Genome polyprotein (74 kDa, Protein from Dengue virus)
- Rna (12 kDa, RNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Rna (Complex from synthetic construct)
- Manganese (ii) ion (54 Da, Ligand)
- Ns5 (Complex from Dengue virus)
- Genome polyprotein (104 kDa, Protein from Dengue virus)
- Cytidine-5'-diphosphate (403 Da, Ligand)
CryoEM structure of sweet potato feathery mottle virus VLP
Resolution: 2.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 8acb
Q-score: 0.564
Chase O, Javed A, Byrne MJ, Thuenemann EC, Lomonossoff GP, Ranson NA, Lopez-Moya JJ
Commun Biol (2023) 6 pp. 433-433 [ DOI: doi:10.1038/s42003-023-04799-x Pubmed: 37076658 ]
- Sweet potato feathery mottle virus (380 kDa, Virus from Sweet potato feathery mottle virus)
- Genome polyprotein (25 kDa, Protein from Sweet potato feathery mottle virus)
- Single-stranded rna (1 kDa, RNA from Ipomoea batatas)
Echovirus3 full particle in complex with 6D10 Fab
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gsd
Q-score: 0.556
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ Pubmed: 36366420 DOI: doi:10.3390/v14112322 ]
- Genome polyprotein (26 kDa, Protein from Echovirus E3)
- Echovirus e3 (Virus from Echovirus E3)
- Sphingosine (299 Da, Ligand)
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Genome polyprotein (fragment) (7 kDa, Protein from Echovirus E3)
- Echovirus3 full particle in complex with 6d10 fab (Complex)
- Genome polyprotein (fragment) (32 kDa, Protein from Echovirus E3)
- Genome polyprotein (29 kDa, Protein from Echovirus E3)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- 6d10 fab (Complex from Mus musculus)
Structure of Echovirus 11 complexed with DAF (CD55) calculated from symmetry expansion
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 8b9f
Q-score: 0.303
Zhou D, Qin L, Duyvesteyn HME, Zhao Y, Lin TY, Fry EE, Ren J, Huang KA, Stuart DI
Viruses (2022) 14 [ DOI: doi:10.3390/v14122625 Pubmed: 36560629 ]
- Sphingosine (299 Da, Ligand)
- Genome polyprotein (28 kDa, Protein from Echovirus E11)
- Complex of echovirus 11 with daf (Complex from Echovirus E11)
- Genome polyprotein (32 kDa, Protein from Echovirus E11)
- Genome polyprotein (26 kDa, Protein from Echovirus E11)
- Complement decay-accelerating factor (29 kDa, Protein from Homo sapiens)
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 7x47
Q-score: 0.474
Zheng Q, Zhu R, Yin Z, Xu L, Sun H, Yu H, Wu Y, Jiang Y, Huang Q, Huang Y, Zhang D, Liu L, Yang H, He M, Zhou Z, Jiang Y, Chen Z, Zhao H, Que Y, Kong Z, Zhou L, Li T, Zhang J, Luo W, Gu Y, Cheng T, Li S, Xia N
Cell Host Microbe (2022) 30 pp. 1279-1294.e6 [ Pubmed: 36002016 DOI: doi:10.1016/j.chom.2022.08.001 ]
- Genome polyprotein (26 kDa, Protein from Coxsackievirus B1)
- 2e6 heavy chain (13 kDa, Protein from Mus musculus)
- Cryo-em structure of coxsackievirus b1 empty particle in complex with nab 2e6 (classified from cvb1 mature virion in complex with 8a10 and 2e6) (Complex from Coxsackievirus B1)
- Virion protein 1 (31 kDa, Protein from Coxsackievirus B1)
- 2e6 light chain (11 kDa, Protein from Mus musculus)
- Vp2 (29 kDa, Protein from Coxsackievirus B1)
Resolution: 3.82 Å
EM Method: Single-particle
Fitted PDBs: 7x4k
Q-score: 0.465
Zheng Q, Zhu R, Yin Z, Xu L, Sun H, Yu H, Wu Y, Jiang Y, Huang Q, Huang Y, Zhang D, Liu L, Yang H, He M, Zhou Z, Jiang Y, Chen Z, Zhao H, Que Y, Kong Z, Zhou L, Li T, Zhang J, Luo W, Gu Y, Cheng T, Li S, Xia N
Cell Host Microbe (2022) 30 pp. 1279-1294.e6 [ Pubmed: 36002016 DOI: doi:10.1016/j.chom.2022.08.001 ]
- Vp3 (26 kDa, Protein from Coxsackievirus B1)
- 9a3 heavy chain (13 kDa, Protein from Mus musculus)
- Virion protein 1 (31 kDa, Protein from Coxsackievirus B1)
- Genome polyprotein (29 kDa, Protein from Coxsackievirus B1)
- 9a3 light chain (11 kDa, Protein from Mus musculus)
- Cryo-em structure of coxsackievirus b1 empty particle in complex with nab 9a3 (classified from cvb1 mature virion in complex with 8a10 and 9a3) (Complex from Coxsackievirus B1)